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A comparative account of primer designing resources, feature-validations and application-based categorizations

Primerquest

Tool namePrimerquest
URLhttp://eu.idtdna.com/Scitools/Applications/Primerquest/Default.aspx
Important features1. Designs primer for real time PCR and Junction primers. 2. Designs primers/probes for SYBR green and TaqMan.
Citations
Year of publicationNot available
Rank by usage frequency98
Comments
FunctionJunction primers, Real time PCR, General PCR, Primer specificity checking
CategoryOnline, Free
Features1. Designs primers for real time PCR and Junction primers. 2. Allows SNP checking, primer pair specificity against the transcriptome, selection of GC clamp and region specificity for primer picking. 3. Designs primers for SYBR green and TaqMan. 4. Option to set the primer parameters such as product length, Tm, GC%, product Tm, etc. 5. Designs primers for exon-exon junctions. 6. Lists the best primers, user can select primers from the list and can export the selected list.
Description

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